{
  "_id": "6a154552acfb0bcc41d573f5",
  "Package": "amp.dm",
  "Title": "Data Management Tools for Pharmacometrics",
  "Version": "0.2.1",
  "Authors@R": "c(person(\"Richard\", \"Hooijmaijers\", email = \"richardhooijmaijers@gmail.com\", role = c(\"aut\", \"cre\",\"cph\")),\nperson(\"LAPP Consultants\",email = \"info@lapp.nl\", role=c(\"fnd\",\"cph\")))",
  "Description": "Tools and functions to efficiently create datasets used in\npharmacometric analysis. Additional functionality is added to\ncreate documentation and prepare files for submission and\nquality control purposes.",
  "License": "GPL (>= 3)",
  "URL": "https://leidenadvancedpkpd.github.io/amp.dm/,\nhttps://github.com/LeidenAdvancedPKPD/amp.dm",
  "BugReports": "https://github.com/LeidenAdvancedPKPD/amp.dm/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "quarto",
  "Config/pak/sysreqs": "cmake make libuv1-dev libx11-dev zlib1g-dev",
  "Repository": "https://leidenadvancedpkpd.r-universe.dev",
  "Date/Publication": "2026-03-30 07:45:27 UTC",
  "RemoteUrl": "https://github.com/leidenadvancedpkpd/amp.dm",
  "RemoteRef": "HEAD",
  "RemoteSha": "4d93661a41efc3c173a4725ba2a1a096ea868889",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 06:57:51 UTC",
    "User": "root"
  },
  "Author": "Richard Hooijmaijers [aut, cre, cph],\nLAPP Consultants [fnd, cph]",
  "Maintainer": "Richard Hooijmaijers <richardhooijmaijers@gmail.com>",
  "MD5sum": "0c7d4248dfac6e60fc54e44f916c2908",
  "_user": "leidenadvancedpkpd",
  "_type": "src",
  "_file": "amp.dm_0.2.1.tar.gz",
  "_fileid": "02513ba67e9182029502b5325cd1f84674424c801a0dc19dd554f9417654db35",
  "_filesize": 708385,
  "_sha256": "02513ba67e9182029502b5325cd1f84674424c801a0dc19dd554f9417654db35",
  "_created": "2026-05-26T06:57:51.000Z",
  "_published": "2026-05-26T07:01:38.775Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77823114504,
      "time": 147,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7210760925"
    },
    {
      "job": 77823114497,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7210758476"
    },
    {
      "job": 77823114484,
      "time": 193,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7210768022"
    },
    {
      "job": 77823114493,
      "time": 157,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7210757441"
    },
    {
      "job": 77816826856,
      "time": 3194,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7210722956"
    },
    {
      "job": 77823114476,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210752402"
    },
    {
      "job": 77823114511,
      "time": 121,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7210754967"
    },
    {
      "job": 77823114510,
      "time": 119,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7210753958"
    },
    {
      "job": 77823114508,
      "time": 138,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7210758556"
    }
  ],
  "_buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/leidenadvancedpkpd/amp.dm",
  "_commit": {
    "id": "4d93661a41efc3c173a4725ba2a1a096ea868889",
    "author": "RichardHooijmaijers <richardhooijmaijers@gmail.com>",
    "committer": "RichardHooijmaijers <richardhooijmaijers@gmail.com>",
    "message": "update for CRAN comment\n",
    "time": 1774856727
  },
  "_maintainer": {
    "name": "Richard Hooijmaijers",
    "email": "richardhooijmaijers@gmail.com",
    "login": "richardhooijmaijers",
    "description": "",
    "uuid": 17103092
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "vctrs",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "role": "Imports"
    },
    {
      "package": "haven",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "xtable",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    },
    {
      "package": "rstudioapi",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "R3port",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    }
  ],
  "_owner": "leidenadvancedpkpd",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-07",
      "n": 6
    },
    {
      "week": "2026-08",
      "n": 3
    },
    {
      "week": "2026-09",
      "n": 3
    },
    {
      "week": "2026-10",
      "n": 17
    },
    {
      "week": "2026-11",
      "n": 1
    },
    {
      "week": "2026-12",
      "n": 2
    },
    {
      "week": "2026-13",
      "n": 6
    },
    {
      "week": "2026-14",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "latest",
      "date": "2026-03-09"
    },
    {
      "name": "new",
      "date": "2026-03-30"
    },
    {
      "name": "previous",
      "date": "2026-03-30"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "richardhooijmaijers",
      "count": 50,
      "uuid": 17103092
    }
  ],
  "_userbio": {
    "uuid": 136434803,
    "type": "organization",
    "name": "LAP&P Leiden Advanced PKPD"
  },
  "_downloads": {
    "count": 544,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/amp.dm"
  },
  "_devurl": "https://github.com/leidenadvancedpkpd/amp.dm",
  "_pkgdown": "https://leidenadvancedpkpd.github.io/amp.dm/",
  "_searchresults": 3,
  "_quarto": true,
  "_topics": [
    "quarto"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/amp.dm.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/leidenadvancedpkpd/amp.dm",
  "_realowner": "leidenadvancedpkpd",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2026-03-13"
    },
    {
      "version": "0.2.1",
      "date": "2026-03-30"
    }
  ],
  "_exports": [
    "attr_add",
    "attr_extract",
    "attr_factor",
    "attr_xls",
    "check_cat",
    "check_nmdata",
    "cmnt",
    "cmnt_print",
    "contents_df",
    "counts_df",
    "create_addl",
    "define_tbl",
    "egfr",
    "expand_addl_ii",
    "fill_dates",
    "filterr",
    "flag_outliers",
    "general_tbl",
    "get_log",
    "get_script",
    "impute_covar",
    "impute_dose",
    "left_joinr",
    "log_df",
    "make_readonly",
    "num_lump",
    "output_data",
    "plot_vars",
    "read_data",
    "session_tbl",
    "srce",
    "stats_df",
    "time_calc",
    "weight_height"
  ],
  "_help": [
    {
      "page": "attr_add",
      "title": "Add attributes from a list to a dataframe",
      "topics": [
        "attr_add"
      ]
    },
    {
      "page": "attr_extract",
      "title": "Extracts attributes from a data frame",
      "topics": [
        "attr_extract"
      ]
    },
    {
      "page": "attr_factor",
      "title": "Create factors for variables within a data frame using the format attribute",
      "topics": [
        "attr_factor"
      ]
    },
    {
      "page": "attr_xls",
      "title": "Reads in attributes from an external excel file",
      "topics": [
        "attr_xls"
      ]
    },
    {
      "page": "check_cat",
      "title": "Create an overview of the available categories",
      "topics": [
        "check_cat"
      ]
    },
    {
      "page": "check_nmdata",
      "title": "Checks nonmem dataset for common errors/mistakes",
      "topics": [
        "check_nmdata"
      ]
    },
    {
      "page": "cmnt",
      "title": "Add comment to environment to present in documentation",
      "topics": [
        "cmnt"
      ]
    },
    {
      "page": "cmnt_print",
      "title": "Function that prints the comments given by cmnt",
      "topics": [
        "cmnt_print"
      ]
    },
    {
      "page": "contents_df",
      "title": "Create information for multiple data frames",
      "topics": [
        "contents_df"
      ]
    },
    {
      "page": "counts_df",
      "title": "Create counts and frequencies within in data frame",
      "topics": [
        "counts_df"
      ]
    },
    {
      "page": "create_addl",
      "title": "Create ADDL data item and deletes unnecessary amount lines",
      "topics": [
        "create_addl"
      ]
    },
    {
      "page": "define_tbl",
      "title": "Create define PDF file for submission of pharmacometric data files",
      "topics": [
        "define_tbl"
      ]
    },
    {
      "page": "egfr",
      "title": "Calculates EGFR values based on different types of formulas",
      "topics": [
        "egfr"
      ]
    },
    {
      "page": "expand_addl_ii",
      "title": "Expand rows in case ADDL and II variables are present",
      "topics": [
        "expand_addl_ii"
      ]
    },
    {
      "page": "fill_dates",
      "title": "Fills down dates within a data frame that include a start and end date",
      "topics": [
        "fill_dates"
      ]
    },
    {
      "page": "filterr",
      "title": "Filter data with logging of results",
      "topics": [
        "filterr"
      ]
    },
    {
      "page": "flag_outliers",
      "title": "Creates a flag for outlying values",
      "topics": [
        "flag_outliers"
      ]
    },
    {
      "page": "get_log",
      "title": "Retrieve log objects",
      "topics": [
        "get_log"
      ]
    },
    {
      "page": "get_script",
      "title": "Get the current script name (either interactive Rstudio, markdown or batch script)",
      "topics": [
        "get_script"
      ]
    },
    {
      "page": "impute_covar",
      "title": "Impute missing covariates",
      "topics": [
        "impute_covar"
      ]
    },
    {
      "page": "impute_dose",
      "title": "Imputes dose records using ADDL and II by looking forward and backwards",
      "topics": [
        "impute_dose"
      ]
    },
    {
      "page": "left_joinr",
      "title": "Perform a left join of two data frames with logging of results",
      "topics": [
        "left_joinr"
      ]
    },
    {
      "page": "log_df",
      "title": "Create information for all functions that log actions",
      "topics": [
        "log_df"
      ]
    },
    {
      "page": "make_readonly",
      "title": "Sets the read-only attribute for all files available within a folder",
      "topics": [
        "make_readonly"
      ]
    },
    {
      "page": "num_lump",
      "title": "Perform lumping of numerical values",
      "topics": [
        "num_lump"
      ]
    },
    {
      "page": "output_data",
      "title": "export R data for NONMEM modeling",
      "topics": [
        "output_data"
      ]
    },
    {
      "page": "plot_vars",
      "title": "Creates different kind of plots for variables within a dataset using ggplot2",
      "topics": [
        "plot_vars"
      ]
    },
    {
      "page": "read_data",
      "title": "read external data with logging of results",
      "topics": [
        "read_data"
      ]
    },
    {
      "page": "session_tbl",
      "title": "Create information for R session",
      "topics": [
        "session_tbl"
      ]
    },
    {
      "page": "srce",
      "title": "Add source information to environment to present in documentation",
      "topics": [
        "srce"
      ]
    },
    {
      "page": "stats_df",
      "title": "Calculate basic statistics on data frame",
      "topics": [
        "stats_df"
      ]
    },
    {
      "page": "time_calc",
      "title": "Create time variables for usage in NONMEM analyses",
      "topics": [
        "time_calc"
      ]
    },
    {
      "page": "weight_height",
      "title": "Calculates different weight variables",
      "topics": [
        "weight_height"
      ]
    }
  ],
  "_pkglogo": "https://github.com/leidenadvancedpkpd/amp.dm/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/leidenadvancedpkpd/amp.dm/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cellranger",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "dplyr",
    "forcats",
    "fs",
    "generics",
    "glue",
    "haven",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "readr",
    "readxl",
    "rematch",
    "rlang",
    "tibble",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr",
    "xtable"
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "amp.dm",
  "_universes": [
    "leidenadvancedpkpd",
    "richardhooijmaijers"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-05-26T07:00:12.000Z",
      "distro": "noble",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "7bb7e8d5becab49f710db2127dce1362fb1461c00529a46b25cc8295dae32239",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-05-26T07:00:06.000Z",
      "distro": "noble",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "500e194070d7a33e3a8e37bbbe3922554f3d1def006dcce5ade3ad01226a2475",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-05-26T07:00:47.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "a90caa079c6bfbcceb09251e1f162dcd98421bd3fdc5eaf686087ac396559b6f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-05-26T07:00:08.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "bd15077a36736d3dd07e2b5cfc6aaf57f4d5a2e6f2b94038432a63c99eed1038",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.1",
      "date": "2026-05-26T07:00:01.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "2225a0b998fe30e64b042f280450552b003e60300bd799bd044870f4ce89af40",
      "status": "success",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-26T06:59:44.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "6994df31f31710e6603edf049b8938e4f6bb624fbbf6cb6b5fc5805a0b82bb25",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-26T06:59:48.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "4aa48e03172f240b1d3b39eef766be414d5329013f2c052472fb592c5fb2cd87",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-26T06:59:57.000Z",
      "commit": "4d93661a41efc3c173a4725ba2a1a096ea868889",
      "fileid": "493487cd4db61773f3793b140bd89a16df36b6e482561cb17788f011efc75170",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/leidenadvancedpkpd/actions/runs/26435346984"
    }
  ]
}